PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10445
Common NameKK1_010745
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YB
Protein Properties Length: 151aa    MW: 17025 Da    PI: 6.2652
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10445genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.55.5e-5537132297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd+++alatlGf+dy +plk yl+kyrelegek
  C.cajan_10445  37 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICYALATLGFDDYTDPLKRYLHKYRELEGEK 132
                    89********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-5234144IPR009072Histone-fold
SuperFamilySSF471131.07E-4039147IPR009072Histone-fold
PfamPF008083.0E-2742106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.0E-207088No hitNo description
PROSITE patternPS0068507389IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.0E-2089107No hitNo description
PRINTSPR006158.0E-20108126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGDNIGKGSH REGFKYNFTA STTAASDTCS LQDGVIKEQD RLLPIANVGR IMKQILPPNA  60
KISKEAKETM QECVSEFISF VTGEASDKCH KEKRKTVNGD DICYALATLG FDDYTDPLKR  120
YLHKYRELEG EKANQNKANN SYENNIENMY N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B3e-4536127192Transcription factor HapC (Eurofung)
4g91_B3e-4536127192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536891.11e-88PREDICTED: nuclear transcription factor Y subunit B-5-like
RefseqXP_007144547.12e-88hypothetical protein PHAVU_007G165100g
SwissprotO822483e-61NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A151TWS51e-111A0A151TWS5_CAJCA; Nuclear transcription factor Y subunit B-5
STRINGGLYMA10G02480.13e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.19e-62nuclear factor Y, subunit B5